This assembly was generated using 101 bp paired-end Illumina HiSeq2000 reads generated from two libraries: a 180 bp insert ‘fragment’ library and a 1.5 kb ‘jump’ library. Sequencing template for the fragment and jump libraries was derived from genomic DNA extracted from a single individual, which was preserved in ethanol. Native genomic DNA was used for the fragment library and whole genome amplified DNA was used for the jump library. Reads were assembled at the Broad Institute using the ALLPATHS LG algorithm, with the Haploidify option enabled to address high allelic heterozygosity in the template.

Genome Size (bp): 
Scaffold N50 (bp): 
3 841
Scaffold count: 
47 797
Release date: 
Wednesday, October 16, 2013


These individuals were collected from Kuala Lumpur and sequencing was performed on preserved females donated by Lee Han Lim. Colony not at MR4.

Gene sets

24 Oct 2017
21 Feb 2017
20 Oct 2015
24 Jun 2014
25 Feb 2014

Assembly Specific Downloads

 Downloads for this assembly