This assembly was generated using 101 bp paired-end Illumina HiSeq2000 reads generated from three libraries: a 180 bp insert ‘fragment’ library, a 1.5 kb ‘jump’ library, and a 38 kb ‘fosill’ library. Sequencing template for the fragment and jump libraries was derived from genomic DNA extracted from a single individual, which was preserved by freezing at -80C. Native genomic DNA was used for the fragment library and whole genome amplified DNA was used for the jump library. Template for the fosill library was generated from a pooled extraction of many individuals. Reads were assembled at the Broad Institute using the ALLPATHS LG algorithm, with the Haploidify option enabled to address high allelic heterozygosity in the template.

Genome Size (bp): 
Scaffold N50 (bp): 
6 906 475
Scaffold count: 
1 266
Release date: 
Tuesday, April 30, 2013


Originally isolated in Thailand this colony has undergone isofemale selection at MR4 before genome sequencing. For more details click here.

Gene sets

22 Oct 2018
21 Feb 2018
24 Oct 2017
25 Apr 2017
21 Feb 2017

Assembly Specific Downloads

 Downloads for this assembly