HMMER Tutorials

Biosequence analysis using profile hidden Markov models

Job Control

* Input format:
- Run a VectorBase ClustalW job, in the output page click on "Send to HMMER"
- Alternatively, paste a ClustalW or Clustal Omega alignment for hmmsearch or a single protein in FASTA for phmmer

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* phmmer: Search a single protein sequence against a protein sequence database (BLASTP-like)
* hmmsearch: Search a protein profile hidden Markov models or profile HMM against a protein sequence database

Parameters
Basic
Cut-off values
Significance
Report
Datasets