Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 13 of 13
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File Organism Size Type Description
Anopheles-albimanus-STECLA_CHROMOSOMES_AalbS2.fa.gz Anopheles albimanus 49.47 MB Chromosomes STECLA strain genomic chromosomes sequences, AalbS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-albimanus-STECLA_SCAFFOLDS_AalbS2.fa.gz Anopheles albimanus 49.45 MB Scaffolds STECLA strain genomic scaffolds sequences, AalbS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-albimanus-STECLA_PEPTIDES_AalbS2.6.fa.gz Anopheles albimanus 4.38 MB Peptides STECLA strain peptide sequences, AalbS2.6 geneset.
Anopheles-albimanus-STECLA_TRANSCRIPTS_AalbS2.6.fa.gz Anopheles albimanus 7.79 MB Transcripts STECLA strain transcript sequences, AalbS2.6 geneset.
Anopheles-albimanus-STECLA_BASEFEATURES_AalbS2.6.gff3.gz Anopheles albimanus 1.76 MB Basefeatures STECLA strain AalbS2.6 geneset in GFF3 format.
Anopheles-albimanus-STECLA_BASEFEATURES_AalbS2.6.gtf.gz Anopheles albimanus 1.53 MB Basefeatures STECLA strain AalbS2.6 geneset in GTF (v2.2) format.
Anopheles-albimanus-white-stripe_TRANSCRIPTOME_Martinez-2.0.fa.gz Anopheles albimanus 5.02 MB Assembled transcriptome 16699 assembled transcript sequences from combined RNAseq and EST sequencing generated by Martínez-Barnetche et al. (2012)
Anopheles-albimanus-white-stripe_TRANSCRIPTOME_Hittinger-1.0.fa.gz Anopheles albimanus 1.49 MB Assembled transcriptome 31295 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-albimanus-STECLA_SCAFFOLD2CHROMOSOME_AalbS2.agp.gz Anopheles albimanus 67.9 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles albimanus STECLA strain, AalbS2 assembly.
Anopheles-albimanus-STECLA_MAPPINGS_AalbS2.1-AalbS2.2.txt Anopheles albimanus 7.67 KB ID Mapping Stable ID mapping between genesets AalbS2.1 and AalbS2.2 (RNA gene update)
Anopheles-albimanus-STECLA_REPEATS.lib Anopheles albimanus 150.18 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles albimanus, STECLA strain.
Anopheles-albimanus-STECLA_REPEATFEATURES_AalbS2.gff3.gz Anopheles albimanus 3.2 MB Repeat features STECLA strain AalbS2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-albimanus_EXPR-STATS_VB-2019-06.txt.gz Anopheles albimanus 814.17 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.