Help:How do I retrieve GO annotations

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[edit] BioMart

The easiest way to get all the GO mappings for Aedes aegypti genes is using BioMart.

  1. Go to http://www.biomart.org
  2. Click on MARTVIEW
  3. Select "ENSEMBL GENES (SANGER)" as the Database
  4. Choose "Aedes aegypti genes (AaegL1)" as the Dataset
    That'll get you started with the Aedes genes.
    GO IDs are listed under attributes.
  5. Click on "Attributes" on the left.
  6. Click on the "EXTERNAL" Expansion plus sign.
  7. Check GO ID or GO Description, based on what you're interested in.
  8. Click on Results in the upper left- That'll give you all the GeneIDs and associated GO Terms.
  9. After the results are pulled up, you can export the data to file in a variety of formats.
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